Description
- Abstract:
- Within clinical discourse, social history (SH) includes important information about substance use (alcohol, drug, and nicotine use) as key risk factors for disease, disability, and mortality. In this study, we developed and evaluated a natural language processing (NLP) system for automated detection of substance use statements and extraction of substance use attributes (e.g. temporal and status) based on Stanford Typed Dependencies. The developed NLP system leveraged linguistic resources and domain knowledge from a multi-site social history study. Propbank and the MiPACQ corpus. The system attained F-scores of 89.8, 84.6 and 89.4 respectively for alcohol, drug, and nicotine use statement detection, as well as average F-scores of 82.1, 90.3, 80.8, 88.7, 96.6, and 74.5 respectively for extraction of attributes. Our results suggest that NLP systems can achieve good performance when augmented with linguistic resources and domain knowledge when applied to a wide breadth of substance use free text clinical notes.
- Notes:
- Source: Electronic Health Record
- Method: Natural Language Processing
- The National Institutes of Health through the National Library of Medicine (R01LM011364 and R01GM102282), Clinical and Translational Science Award (8UL1TR000114-02) supported this work
- Paper presented at the 2015 AMIA Annual Symposium
Access Conditions
- Use and Reproduction
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- This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License
Citation
Wang, Yan, Chen, Elizabeth S., Pakhomov, Serguei, et al.,
"Automated extraction of substance use information from clinical texts"
(2015).
SFHERE Publications and Presentations.
Brown Digital Repository. Brown University Library.
https://repository.library.brown.edu/studio/item/bdr:697507/
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Collection:
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SFHERE Publications and Presentations
This collection houses journal articles, conference papers and presentations, and abstracts and posters authored by members of the SFHERE team....