Brown University
  1. Top
  2. ...
  3. Brown University Superfu…
  4. Brown Superfund Data Products

Brown Superfund Data Products

This collection contains data sets, code, and documentation files associated with the Brown University Superfund Research Program's investigators and research projects.

Refine your results

Items

Items (1-20) out of 24 results

Controlling Nanochannel Orientation and Dimensions in Graphene-Based Nanofluidic Membranes

Description:
There is great interest in exploiting van der Waals gaps in layered materials as nanofluidic channels. Graphene oxide (GO) nanosheets are known to spontaneously assemble …
Contributor:
Liu, Muchun (creator)
Weston, Paula J. (creator)
Hurt, Robert H. (creator)
Subject:
Graphene
Nanofluids
Membrane separation
Language:
English
Collection:
Brown University Open Data Collection
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Full Record

Data from "A novel human 3D lung microtissue model for nanoparticle-induced cell-matrix alterations"

Description:
Data from: Kabadi et al. Particle and Fibre Toxicology (2019) 16:15 https://doi.org/10.1186/s12989-019-0298-0. Multi-walled carbon nanotubes (MWCNT) have been shown to elicit the release of inflammatory …
Year:
2019
Contributor:
Kabadi, Pranita K. (creator)
Rodd, April L. (creator)
Simmons, Alysha E. (creator)
Messier, Norma J. (creator)
Hurt, Robert H. (creator)
Kane, Agnes B. (creator)
Subject:
Toxicology
Carbon nanotubes
Language:
English
Collection:
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 4: Nanomaterial Design for Environmental Health and Safety
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 2: Adverse Human Health Impacts of Nanomaterials Digital Archive
Kane Lab Digital Archive and Data Repository
Kane Lab Data Archive
Brown University Open Data Collection
Full Record

Data from "Intra‐ and inter‐individual differences in human sperm DNA methylation"

Description:
Sperm epigenetic differences between successive semen samples from 12 patients were examined to identify the intra‐ and inter‐individual differences globally across the genome, and in …
Year:
2016
Contributor:
Dere, Edward Dere (creator)
Huse, Susan (creator)
Hwang, Kathleen (creator)
Sigman, Mark (creator)
Boekelheide, Kim (creator)
Subject:
Epigenetics
DNA--Methylation
Semen
Language:
English
Collection:
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 1: Molecular Biomarkers for Assessing Testicular Toxicity Digital Archive
Brown University Open Data Collection
Full Record

georeg: a pipeline for extracting addresses and other business information from historical registries

Description:
georeg is a research prototype for extracting addresses and other business information from historical registries, developed by the CIS Data Science Practice at Brown University, …
Year:
2016
Contributor:
Berenbaum, David (Creator)
Deighan, Dwyer (Creator)
Marlow, Thomas (Creator)
Lee, Ashley (Creator)
Frickel, Scott (Creator)
Howison, Mark (Creator)
Subject:
Providence
rhode island
historical registries
Industrialization
Toxicant Exposures
Collection:
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Brown University Superfund Research Program Digital Archive
Superfund Project: Socio-environmental Cities
Brown University Open Data Collection
Full Record

Image and Video Data Files from "Into the Depths: Techniques for in vitro Three-Dimensional Microtissue Visualization"

Description:
Data from: Into the depths: Techniques for in vitro three-dimensional microtissue visualization Pranita K. Kabadi, Marguerite M. Vantangoli, April L. Rodd, Elizabeth Leary, Samantha J. …
Year:
2015
Contributor:
Kabadi, Pranita K. (Creator)
Vantangoli, Marguerite M. (Creator)
Rodd, April L. (Creator)
Leary, Elizabeth (Creator)
Madnick, Samantha J. (Creator)
Morgan, Jeffrey R. (Creator)
Kane, Agnes (Creator)
Boekelheide, Kim (Creator)
Subject:
visualization
microtissues
3-D in vitro testing systems
3-D microtissues
histology
microscopy
toxicology
Collection:
Kane Lab Digital Archive and Data Repository
Kane Lab Data Archive
Brown University Open Data Collection
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Full Record

Longitudinal Manufacturing Database for Rhode Island Establishments, 1953 - 2016

Description:
This file contains the location of manufacturing facilities in Rhode Island between the years 1953 and 2012. This data was collected from digitized manufacturing directories …
Year:
2018
Contributor:
Marlow, Thomas (Creator)
Frickel, Scott (Creator)
Subject:
land use
historical industrial and manufacturing sites
toxic exposures
Collection:
Brown University Superfund Research Program Digital Archive
Superfund Project: Socio-environmental Cities
Brown Superfund Data Products
Brown University Open Data Collection
Full Record

nChIP-seq data deposited on GEO: GSE108182 Localization of dimethylated histone three lysine four in the Rattus norvegicus sperm genome.

Description:
nChIP-seq data deposited on GEO: GSE108182 (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE108182). We examined the precise localization of dimethylated histone three lysine four (H3K4me2) in mature rat sperm. Within nonintergenic-enriched …
Year:
2018
Contributor:
Wilson, Shelby (Creator)
Dere, Edward (Creator)
Klein, David (Creator)
Schorl, Christoph (Creator)
Hall, Susan (Creator)
Boekelheide, Kim (Creator)
Subject:
rat
sperm
Rattus norvegicus sperm genome
Collection:
Brown University Open Data Collection
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 1: Molecular Biomarkers for Assessing Testicular Toxicity Digital Archive
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Full Record

Providence, RI business location data, 1936-1990, from Polk and Sampson and Murdoch City Directories

Description:
This dataset contains parsed, extracted, and geocoded business data from the Yellow Pages of 27 Providence City Directories covering the period from 1936 to 1990. …
Year:
2019
Contributor:
Bell, Samuel (creator)
Marlow, Thomas (creator)
Wombacher, Kai (creator)
Hitt, Anina (creator)
Parikh, Neev (creator)
Zsom, Andras (creator)
Frickel, Scott (creator)
Subject:
City planning
History, Modern
Rhode Island--Providence
Environmental policy
Corporations
Sociology
Language:
English
Collection:
Brown University Open Data Collection
Brown University Superfund Research Program Digital Archive
Superfund Project: Socio-environmental Cities
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Full Record

Short-term in vitro culture of rat fetal testes with all-trans retinoic acid

Description:
Organism: Rattus norvegicus and Experiment type: Expression profiling by array. Summary: Analysis of gene expression and alternate splicing effects of retinoic acid treatment on gestational …
Year:
2019
Contributor:
Spade, DJ (creator)
Schorl, C (creator)
Dere, E (creator)
Hall, SJ (creator)
Boekelheide, K (creator)
Subject:
Rattus norvegicus
Language:
English
Collection:
Brown University Open Data Collection
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 1: Molecular Biomarkers for Assessing Testicular Toxicity Digital Archive
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Full Record

Supplementary data from "All-Trans Retinoic Acid Disrupts Development in Ex Vivo Cultured Fetal Rat Testes. I: Altered Seminiferous Cord Maturation and Testicular Cell Fate"

Description:
Exposure to excess retinoic acid (RA) disrupts the development of the mammalian testicular seminiferous cord. However, the molecular events surrounding RA-driven loss of cord structure …
Year:
2018
Contributor:
Spade, Daniel J (creator)
Dere, Edward (creator)
Hall, Susan J (creator)
Schorl, Christoph (creator)
Freiman, Richard N (creator)
Boekelheide, Kim (creator)
Subject:
Testis
Tretinoin
Language:
English
Collection:
Brown University Open Data Collection
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 1: Molecular Biomarkers for Assessing Testicular Toxicity Digital Archive
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Full Record

Supplementary data from "All-trans Retinoic Acid Disrupts Development in Ex Vivo Cultured Fetal Rat Testes. II: Modulation of Mono-(2-ethylhexyl) Phthalate Toxicity"

Description:
Humans are universally exposed to low levels of phthalate esters (phthalates), which are used to plasticize polyvinyl chloride. Phthalates exert adverse effects on the development …
Year:
2018
Contributor:
Sapde, Daniel J (creator)
Hall, Susan J (creator)
Wortzel, Jeremy D (creator)
Reyes, Gerardo (creator)
Boekelheide, Kim (creator)
Subject:
Testis
Phthalate esters
Language:
English
Collection:
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Brown University Open Data Collection
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 1: Molecular Biomarkers for Assessing Testicular Toxicity Digital Archive
Full Record

Supplementary Data from "Evaluation and Management Strategies for Per- and Polyfluoroalkyl Substances (PFASs) in Drinking Water Aquifers: Perspectives from Impacted U.S. Northeast Communities"

Description:
Table S1. Research translation approach with Northeast US PFAS stakeholders and Table S2 Information resources for potential PFAS sources in Rhode Island, and References documentation.
Year:
2018
Subject:
Polyfluoroalkyl Substances
Perfluoroalklyl Susbtances
PFASs
Drinking Water Aquifers
Collection:
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Brown University Open Data Collection
Full Record

Supplementary data from "Small RNAs in Rat Sperm Are a Predictive and Sensitive Biomarker of Exposure to the Testicular Toxicant Ethylene Glycol Monomethyl Ether"

Description:
Testicular histology and semen parameters are considered the gold standards when determining male reproductive toxicity. Ethylene glycol monomethyl ether (EGME) is a testicular toxicant with …
Year:
2019
Contributor:
Stermer, Angela R (creator)
Reyes, Gerardo (creator)
Hall, Susan J (creator)
Boekelheide, Kim (creator)
Subject:
Testis
Rats
Biochemical markers
Epigenetics
RNA
Non-coding RNA
Language:
English
Collection:
Brown University Open Data Collection
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 1: Molecular Biomarkers for Assessing Testicular Toxicity Digital Archive
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Full Record

Supplementary data from "Sperm Molecular Biomarkers Are Sensitive Indicators of Testicular Injury following Subchronic Model Toxicant Exposure"

Description:
We hypothesized that sperm messenger RNA (mRNA) transcripts and DNA methylation marks can be used as translatable and sensitive indicators or testicular injury. Dose-response studies …
Year:
2016
Contributor:
Dere, Edward Dere (creator)
Wilson, Shelby K. (creator)
Anderson, Linnea M. (creator)
Boekelheide, Kim (creator)
Subject:
Testis
Biochemical markers
Epigenetics
RNA
DNA--Methylation
Spermatozoa
Language:
English
Collection:
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 1: Molecular Biomarkers for Assessing Testicular Toxicity Digital Archive
Brown University Open Data Collection
Full Record

Supplementary data from "Validation of an automated counting procedure for phthalate-induced testicular multinucleated germ cells"

Description:
An automated counting method was developed in ImageJ to quantify MNGs in digital images of hematoxylin-stained rat fetal testis tissue sections. Timed pregnant Sprague Dawley …
Year:
2018
Contributor:
Spade, Daniel J. (creator)
Yue Bai, Cathy (creator)
Lambright, Christy (creator)
Conley, Justin M. (creator)
Boekelheidea, Kim (creator)
Gray, L. Earl (creator)
Subject:
Microscopy
Testis
Rats
Counting
Language:
English
Collection:
Brown University Open Data Collection
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 1: Molecular Biomarkers for Assessing Testicular Toxicity Digital Archive
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Full Record

Supplementary file for manuscript "Evaluating the Mechanistic Evidence and Key Data Gaps in Assessing the Potential Carcinogenicity of Carbon Nanotubes and Nanofibers in Humans"

Description:
Supplementary files for Eileen D. Kuempel, Marie-Claude Jaurand, Peter Møller, Yasuo Morimoto, Norihiro Kobayashi, Kent E. Pinkerton, Linda M. Sargent, Roel C. H. Vermeulen, Bice …
Year:
2016
Contributor:
D. Kuempel, Eileen (Creator)
Jaurand, Marie-Claude (Creator)
Møller, Peter (Creator)
Morimoto, Yasuo (Creator)
Kobayashi, Norihiro (Creator)
Pinkerton, Kent E. (Creator)
Sargent, Linda M. (Creator)
Vermeulen, Roel C. H. (Creator)
Fubini, Bice (Creator)
Kane, Agnes B. (Creator)
Subject:
Cancer mechanisms
carbon nanofibers
carbon nanotubes
cell proliferation
fibrosis
genotoxicity
inflammation
lung cancer
mesothelioma
particle retention
pulmonary
translocation
Collection:
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 2: Adverse Human Health Impacts of Nanomaterials Digital Archive
Brown University Open Data Collection
Full Record

Supplementary file from manuscript "A 3D fish liver model for aquatic toxicology: Morphological changes and Cyp1a induction in PLHC-1 microtissues after repeated benzo(a)pyrene exposures"

Description:
Supplementary files for manuscript "A 3D fish liver model for aquatic toxicology: Morphological changes and Cyp1a induction in PLHC-1 microtissues after repeated benzo(a)pyrene exposuresPMID: 28282620 …
Year:
2016
Contributor:
Rodd, April L. (Creator)
Messier, Norma J. (Creator)
Vaslet, Charles A. (Creator)
Kane, Agnes B. (Creator)
Subject:
animal alternatives
cytochrome P450 1A
Cyp1a
fish
hepatocytes
morphology
polycyclic aromatic hydrocarbons
PAHs
Collection:
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 2: Adverse Human Health Impacts of Nanomaterials Digital Archive
Brown University Open Data Collection
Full Record

Supplementary files from: "Intra- and Inter-Individual Differences in Human Sperm DNA Methylation"

Description:
These supplementary files contain figures and tables of data underlying the results published in: Andrology. 2016 Sep; 4(5): 832–842. DOI: 10.1111/andr.12170.
Year:
2016
Contributor:
Dere, Edward (Creator)
Huse, Susan M. (Creator)
Hwang, Kathleen (Creator)
Sigman, Mark (Creator)
Boekelheide, Kim (Creator)
Subject:
human sperm
DNA methylation
sperm quality
epigenetics
semen analysis
Collection:
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 1: Molecular Biomarkers for Assessing Testicular Toxicity Digital Archive
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Brown University Open Data Collection
Full Record

Supplementary material from "Differential toxicity of water versus gavage exposure to trichloroethylene in rats"

Description:
Trichloroethylene (TCE) is a persistent environmental contaminant that causes male reproductive toxicity. We investigated whether transient increases in TCE exposure modulated male reproductive toxicity by …
Year:
2019
Contributor:
Stermer, Angela R. (creator)
Klein, David (creator)
Wilson, Shelby K. (creator)
Dalaijamts, Chimeddulam (creator)
Yue Bai, Cathy (creator)
Hall, Susan J. (creator)
Madnick, Samantha (creator)
Bianchi, Enrica (creator)
Chiu, Weihsueh A. (creator)
Boekelheide, Kim (creator)
Subject:
Trichloroethylene
Toxicity testing
Rats
Language:
English
Collection:
Brown University Open Data Collection
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 1: Molecular Biomarkers for Assessing Testicular Toxicity Digital Archive
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Full Record

Supporting materials for "Biodissolution and Cellular Response to MoO3 Nanoribbons and a New Framework for Early Hazard Screening for 2D Materials"

Description:
Supplementary files for "Biodissolution and Cellular Response to MoO3 Nanoribbons and a New Framework for Early Hazard Screening for 2D Materials" (DOI: 10.1039/C8EN00362A).
Year:
2018
Contributor:
Evan Gray (Author)
Browning, Cynthia (Author)
Wang, Mengjing (Author)
Gion, Kyle (Author)
Chao, Eric (Author)
Koski, Kristie (Author)
Kane, Agnes (Author)
Hurt, Robert (Author)
Subject:
2D nanomaterials
biopersistence
cytotoxicity
nanotoxicity
Collection:
Brown University Superfund Research Program Digital Archive
Brown Superfund Data Products
Brown University Open Data Collection
Kane Lab Digital Archive and Data Repository
Kane Lab Data Archive
Brown University Superfund Research Program Digital Archive
Brown Superfund Project 2: Adverse Human Health Impacts of Nanomaterials Digital Archive
Full Record

Items (1-20) out of 24 results